Nikolas Dovrolis, MSc, PhD

Resume / CV

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mySOCIALlinks

CONTACTme

personalINFORMATION

Born in

April 16 1980 in Alexandroupolis, Evros, Greece

Marital Status

Single

Various

No Army obligations

myRESEARCH interests

Google Scholar Profile : http://scholar.google.gr/citations?user=zoOndhIAAAAJ&hl=en&oi=sra

RNAseq, Virology, Gut microbiome, Metagenomics, Drug Repositioning, BioInformatics, Inflammatory Bowel Disease, Ontologies, Open Linked Data, social networks, Big Data, health telematics, data visualizations, network resources and security management, web technologies, patient empowerment

education&degrees

PhD

“Computational analysis of the interactions between the microbiome and mucosal immunological responses as targets for new therapies”
Dept. of Medicine, Democritus University of Thrace, Greece

2019

PhD Candidate

“Computational analysis of the interactions between the microbiome and mucosal immunological responses as targets for new therapies”
Dept. of Medicine, Democritus University of Thrace, Greece
George Kolios Team

2016

Master of Science

“Translational Research in Molecular Biology & Genetics” Dept. of Molecular Biology & Genetics, Democritus University of Thrace, Greece

2016

Certificate of Completion

“Introduction to Clinical Research
Internation Conference on Harmonization
Good Clinical Practice”

2015

BSc

Computer Science Dept. of Computer Science, University of Ioannina, Greece

2007

Language Skills

Cambridge Proficiency in English

1997

myCOMPUTINGskills

  • Programming Languages:PHP, Javascript, Java, ANSI C, Python, R
  • Drug Repositioning: Linear Models for Microarray Data (Limma), Library of Integrated Cellular Signatures ( lincscloud), Database for Annotation, Visualization and Integrated Discovery (DAVID), Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
  • Microbiome Analysis: QIIME, PICRUSt, STAMP, Calypso, R-packages (lsmeans, MASS, survival, lme4, Matrix, made4, gplots, rjson, scales, ggplot2, reshape2, RColorBrewer, ade4, vegan, lattice, permute)
  • NGS, Whole exome sequencing, RNAseq, GWAS: GATK, Salmon, STAR, TUXEDO suite
  • Web Technologies:RESTful, AJAX, JQuery, GraphML ,CSS3, HTML5
  • FrameworksDotNetNuke, WordPress, Joomla, Drupal, BootStrap, Moodle, Claroline, Elgg, Social Graph, Buddypress
  • Semantic Technologies:XML/RDF, ontology development, Open Linked Data, semantic repositories, SPARQL endpoint implementations, triplify
  • Databases:Oracle SQL, MySQL, SQLi, SPARQL, Sesame TripleStore Semantic repository
  • Software:Lime Online Survey, Gephi graph visualization tool, Prefuse visualization toolkit, CytoScape, PertChart Expert project management utility, Microsoft Project, Microsoft Office Suite
  • Administration:IIS, Apache, Tomcat, Active Directory, BSD, Linux, Windows, NAS storage management, remote assistance, teleconferencing, multiple systems deployment techniques

professionalEXPERIENCE

2019 -

Post Doctoral Researcher, Dept. of Medicine, Democritus University of Thrace

-Genome and transcriptome bioinformatics research & analysis
member of the project INSEQT « ΚΑΤΑΠΟΛΕΜΗΣΗ ΑΙΜΑΤΟΦΑΓΩΝ ΕΝΤΟΜΩΝ ΜΕΣΩ ΤΗΣ ΤΕΧΝΟΛΟΓΙΑΣ NGS ΓΙΑ ΜΑΖΙΚΟ ΓΟΝΙΔΙΩΜΑΤΙΚΟ ΚΑΙ ΜΕΤΑΓΡΑΦΩΜΙΚΟ ΕΛΕΓΧΟ»
Project funded by ESPA 2014-2020, Greece
(Workpackages 3 and 4)
-Project Coordinator I. Karakasiliotis, Assistant Professor, Faculty of Medicine, DUTH

2014-

Master’s Programme Administrator , Laboratory of Pharmacology, Dept. of Medicine, Democritus University of Greece

-Experimental Web development in HTML5
-Electronic support for the MSc “Clinical Pharmacology and Therapeutics”

Work done in collaboration with Professor Dr. George Kolios (gkolios@med.duth.gr)

2008 2013

Associate Researcher, Dept. of Medicine, Democritus University of Thrace

-research & development involving social networks and theory, visualizations, technology enhanced learning, patient empowerment services, homecare telematics, web applications, the semantic web and Linked Open Data, Information Modeling, medical risk and risk factors, comorbidity management, patient empowerment , medical ontologies, clinical guidelines
-R&D proposal writing
-system administration & technical support
-teaching assistant

Work done in collaboration with Associate Professor Dr.Eleni Kaldoudi (kaldoudi@med.duth.gr) and Professor Dr. Vassilis Vargemezis MD (vargem@med.duth.gr).

2009

Freelance

web programming and development for local SMEs: AlphaIT & Exedron

20042005

Systems and Networks Administrator, Biomedical Research Foundation, Academy of Athens

Supervisor: Dr. George Spyrou (gspyrou@bioacademy.gr)

20012003

Systems Support Group, Dept. of Computer Science, University of Ioannina

Supervisor: Prof. Ioannis Fudos (fudos@cs.uoi.gr)

scientificPROGRAMME committees

  • Linked Learning 2018 programme committee
    7th International Workshop on Learning and Education with the Web of Data, 27 May 2018, at the 10th ACM Conference on Web Science, Amsterdam, Netherlands ( https://lile2018.wordpress.com/)
  • Linked Learning 2016 programme committee
    6th International Workshop on Learning and Education with the Web of Data 11 April 2016, at the World Wide Web Conference (WWW2016), Montreal, Canada (https://lile2016.wordpress.com/ )
  • Linked Learning 2015 programme committee
    5th International Workshop on Learning and Education with the Web of Data 19 May 2015, at the World Wide Web Conference (WWW2015), Florence, Italy ( https://lile2015.wordpress.com/ )
  • Linked Learning 2014 programme committee
    4th International Workshop on Learning and Education with the Web of Data 19-20 October 2014, at the International Semantic Web Conference 2014 (ISWC2014), Riva del Garda, Italy (http://linkededucation.org/events/lile2014/)
  • Linked Learning 2013 programme committee3rd International Workshop on Learning and Education with the Web of Data 17 May 2013, at the World Wide Web Conference 2013 (WWW2013), Rio de Janeiro, Brazil (http://lile2013.linkededucation.org/)
  • LALD2012 programme committee1st International Workshop on Learning Analytics and Linked Data April 29, 2012, at the 2nd International Conference on Learning Analytics and Knowledge (LAK12), Vancouver, Canada (http://lald2012.wordpress.com/)
  • Linked Learning 2012 programme committee2nd International Workshop on Learning and Education with the Web of Data 17 April 2012, at the World Wide Web Conference 2012 (WWW2012), Lyon, France (http://linkedlearning2012.wordpress.com/)
  • ACM SIGDOC 2011 programme committee:Special Interest Group on Design of Communication Conference, October 3-5 2011, Pisa, Italy (http://www.sigdoc.org/2011/)
  • Linked Learning 2011 programme committee1st International Workshop on eLearning Approaches for the Linked Data Age, 29 May 2011, co-located with the 8th Extended Semantic Web Conference, ESWC2011, Hersonissos, Greece (http://projects.kmi.open.ac.uk/meducator/linkedlearning/)

myREVIEWS

  • 6th International Workshop on Learning and Education with the Web of Data 11 April 2016, at the World Wide Web Conference (WWW2016), Montreal, Canada
  • RRIOC Journal (Romanian Journal of Human - Computer Interaction) http://rochi.utcluj.ro/rrioc/en/
  • 5th International Workshop on Learning and Education with the Web of Data 19 May 2015, at the World Wide Web Conference (WWW2015), Florence, Italy
  • 4th International Workshop on Learning and Education with the Web of Data 19-20 October 2014, at the International Semantic Web Conference 2014 (ISWC2014), Riva del Garda, Italy
  • Briefings in Bioinformatics Journal (http://bib.oxfordjournals.org/)
  • 3rd International Workshop on Learning and Education with the Web of Data 17 May 2013, at the World Wide Web Conference 2013 (WWW2013), Rio de Janeiro, Brazil
  • 1st International Workshop on Learning Analytics and Linked Data April 29, 2012, at the 2nd International Conference on Learning Analytics and Knowledge (LAK12), Vancouver, Canada
  • Linked Learning 2012 2nd International Workshop on Learning and Education with the Web of Data 17 April 2012, at the World Wide Web Conference 2012 (WWW2012), Lyon, France
  • Special Interest Group on Design of Communication Conference, October 3-5 2011, Pisa, Italy (http://www.sigdoc.org/2011/)
  • 1st International Workshop on eLearning Approaches for the Linked Data Age, 29 May 2011, co-located with the 8th Extended Semantic Web Conference, ESWC2011, Hersonissos, Greece

technicalWORK

20012003

Dept. of Computer Science, University of Ioannina

  • administration of MS Windows servers and student labs
  • management of Unix email accounts
  • maintenance of Oracle DBMS
  • networking on Solaris, BSD and linux systems
20042005

Biomedical Research Foundation, Academy of Athens

  • systems and networks security and maintenance over multiple operating platforms (Windows, Linux, FreeBSD).
  • Apache web server and Tomcat configuration and customization
  • development, programming and maintenance of a computer grid (project: el Greco) for fast data processing and biomedical applications (ROCKS grid, parallel computing)
20082013

Dept. of Medicine, Democritus University of Thrace

Uml Modeling of Clinical Protocols and Risk Factors
Development and system administration of the following:
2014-

Laboratory of Pharmacology, Dept. of Medicine, Democritus University of Thrace

  • Development and administration of the Master’s Programme portal (http://clinical-pharmacology.med.duth.gr)
  • Drug repositioning using gene expression approaches (limma, LINCSCLOUD, DAVID, ENRICHR)
  • Microbiome bioinformatics analysis (16s rRNA sequence analysis)
2019-

Laboratory of Medical Biology, Dept. of Medicine, Democritus University of Thrace

  • RNA seq alignment (BBMAP, STAR, SALMON)
  • RNA seq assembly (TRINITY, rnaspades)
  • Differential Gene Expression Analysis (DESEQ2, GFOLD)

myTEACHINGexperience

The Public Institute of Vocational Training (IEK), Alexandroupolis

Courses taught:
-System Security
-Network Technologies
-Web Programming

2006-2008

Department of Medicine, DUTH

Invited Lectures in the undergraduate course "Internet and Health" (course coordinator: Ass. Prof. E. Kaldoudi) on:
-System Security
-Network Technologies
-Web Programming

2008-2012

RESEARCH&DEVELOPMENT projects

  • Project Title: «Καταπολέμηση αιματοφάγων εντόμων μέσω της τεχνολογίας NGS για μαζικό γονιδιωματικό και μεταγραφωμικό έλεγχο (INSEQT)» MIS 5030757
    Programme: Επιχειρησιακό Πρόγραμμα «Ανταγωνιστικότητα, Επιχειρηματικότητα και Καινοτομία», ESPA 2014-2020, Greece
    Project Type: Collaboration of Researchers coordinated by the Democritus University of Thrace
    Duration: 2019-2022
    Budget: 1.00.000 €
    Role: Researcher, Bioinformatics expert
  • Project Title: HELCOHOP: Development of Electronic Clinical Protocols
    Programme: Thalis, ESPA 2007-2013, Greece
    Project Type: Collaboration of Researchers coordinated by the University of Athens
    Duration: 2012-2015
    Budget: 600.000 €
    Role: Researcher. Work on workpackages: 4 (development of clinical algorithms- collaborative repurposing), 6 (clinical protocol pilot deployment – clinical protocol finalization),7 (clinical protocol systematic deployment),8 (clinical data analysis-final report) , 9 (dissemination of findings)
  • Project Title: mEducator - Multi-type Content Repurposing and Sharing in Medical Education
    Programme: eContentplus 2008, Information Society and Media Directorate-General, EU
    Project Type: Best Practice Network, 14 EU partners
    Duration: 2009-2012
    Budget: 4.500.000 €
    Role: Co-created the mEducator RDF Schema, main developer of the MetaMorphosis+ social network for educational resources, co-authored many project deliverables, dissemination presentations at various conferences, annotated and repurposed educational resources, created scenarios for user-based evaluation and deployed them on student groups. Member of the Technical Reference Group.
  • Project Title: Prototype System for Home Care Support of Renal Deficiency
    Programme: DESMI 2008 - Research Promotion Foundation, Cyprus
    Project Type: Cooperation, 2 partners
    Duration: 2009-2010
    Budget: 162.668 €
    Role: Evaluation of the project’s technical outcomes
  • Project Title: WideMEDnet - A Mediterranean network for Higher and Continuing Medical Education Resources
    Programme: ARCHIMED – Interreg III, Strand B, ERDF, European Community
    Project Type: Cooperation, 5 EU partners
    Duration: 2008
    Budget: 481.000 €
    Role: Deployed a Moodle network between partners for sharing educational resources and curricula and provided technical training
  • Project Title: PERKA - Home Care Telematics for Peritoneal Dialysis
    Programme : Cooperation 2002-2006, GSRT, Greece [Κοινοπραξίες Έρευνας και Τεχνολογικής Ανάπτυξης σε τομείς Εθνικής Προτεραιότητας, ΠΕΠ Ανατολικής Μακεδονίας και Θράκης, 2002-2006, Γενική Γραμματεία Έρευνας και Τεχνολογίας, Υπουργείο Ανάπτυξης]
    Project Type: Cooperation, 3 Greek partners
    Duration: 2006-2008
    Budget: 640.000 €
    Role: Patient training, technical assistance and website maintenance
  • Project Title: Undergraduate Program of the Democritus University of Thrace
    Programme : ΠΡΟΩΘΗΣΗ ΚΑΙ ΒΕΛΤΙΩΣΗ ΤΗΣ ΕΚΠΑΙΔΕΥΣΗΣ ΚΑΙ ΤΗΣ ΑΡΧΙΚΗΣ ΕΠΑΓΓΕΛΜΑΤΙΚΗΣ ΚΑΤΑΡΤΙΣΗΣ ΣΤΟ ΠΛΑΙΣΙΟ ΤΗΣ ΔΙΑ ΒΙΟΥ ΜΑΘΗΣΗΣ
    ΕΠΕΑΕΚ ΙΙ
    Role: Technical Support, system administration and web development. Deployed the e-learning Platform Moodle for the School of Medicine which I maintained until the end of 2013.

ScientificPUBLICATIONS




Book Chapters

  • S. Stefanut, D. Gorgan, E. Kaldoudi, N. Dovrolis, S. Dietze, , “Creating Education Resources for Medical Education in the Web2.0/Web3.0 Era”, Chapter 15 in: T. Issa, P. Isaías and P. Kommers (eds.), “Information Systems and Technology for Organizations in a Networked Society”, pp. 275-294, IGI Global, Hershey, PA, USA, 2013 (in press) (ISBN 978-1-4666-4062-7) (invited, peer-reviewed)
  • Giordano D., Dietze S., Spampinato C., Taibi D., Kaldoudi E., Dovrolis N., Mitsopoulou E., Yu H. Q., Konstantinidis S., Charalampos B., Bamidis P. (2011). Towards linking educational resources on the web through clustering and enrichment: the mEducator schema. In: Bamidis P, L. Despotova-Toleva, V. Anastasov, editors. E-education E-science. Plovdiv, Bulgaria: Medical Publishing VAP; 2011 (ISBN 978-960-243-682-0).

Journal Articles

  • Gazouli, M.*, Dovrolis, N.*, Franke, A., Spyrou, G. M., Sechi, L. A., & Kolios, G. (2019). Differential genetic and functional background in inflammatory bowel disease phenotypes of a Greek population: a systems bioinformatics approach. Gut Pathogens, 11(1), 31. *Equal Contribution
  • Dovrolis, N., Filidou, E., & Kolios, G. (2019). Systems biology in inflammatory bowel diseases: on the way to precision medicine. Annals of gastroenterology, 32(3), 233.
  • Dovrolis, N., Drygiannakis, Ι., Filidou, Ε., Kandilogiannakis, L., Arvanitidis, K., Tentes, I., Kolios, G., Valatas, V., (2018) Gut microbial signatures underline complicated Crohn’s Disease but vary between cohorts; an in silico approach, Inflammatory Bowel Diseases
  • Dovrolis, N., Kolios, G., Spyrou, G., & Maroulakou, I. (2017). Laying in silico pipelines for drug repositioning: a paradigm in ensemble analysis for neurodegenerative diseases. Drug Discovery Today.
  • Dietze, S., Taibi, D., Yu, H.Q., Dovrolis, N., 2015. A Linked Dataset of medical educational resources. Br J Educ Technol n/a–n/a. doi:10.1111/bjet.12276
  • Dietze, S., Kaldoudi, E., Dovrolis, N., Giordano, D., Spampinato, C., Hendrix, M., Protopsaltis, A., Taibi, D., Yu, H. Q. (2013), Socio-semantic Integration of Educational Resources – the Case of the mEducator Project, in Journal of Universal Computer Science (J.UCS), Vol. 19, No. 11, pp. 1543-1569.
  • Alexandridou, Anastasia, Nikolas Dovrolis, George Th Tsangaris, Konstantina Nikita, and George Spyrou. "PepServe: a web server for peptide analysis, clustering and visualization." Nucleic Acids Research 39, no. suppl 2 (2011): W381-W384.
  • Kaldoudi, Eleni, Nikolas Dovrolis, S. Konstantinidis, and Panagiotis D. Bamidis. "Depicting educational content repurposing context and inheritance." Information Technology in Biomedicine, IEEE Transactions on 15, no. 1 (2011): 164-170.
  • E. Kaldoudi, N. Dovrolis, S. Konstantinidis, P. Bamidis, “Educational Content Organization and Retrieval via a Social Network”, presented in the 2nd International Conference on Virtual Patients & MedBiquitous Annual Conference, London UK, April 26-28, 2010, and published in Bio-Algorithms and Med-Systems, vol. 6(11), p. 71, 2010
  • Kaldoudi, Eleni, Nicolas Dovrolis, Stathis Konstantinidis, and P. D. Bamidis. "Social networking for learning object repurposing in medical education." The Journal on Information Technology in Healthcare 7, no. 4 (2009): 233-243.

Conferences

  • 39ο Πανελλήνιο Συνέδριο Γαστρεντερολογίας, Αλεξανδρούπολη, 2019, Μαριάννα Μπούλκου, Ιωάννης Δρυγιαννάκης, Ειρήνη Φιλίδου, Νικόλαος Δόβρολης, Κωνσταντίνος Αρβανιτίδης, Λεωνίδας Κανδηλογιαννάκης, Ιωάννης Μουζά1, Ιωάννης Κουτρουμπάκης, Γεώργιος Κολιός, Βασίλειος Βαλάτας, «ΑΝΘΡΩΠΙΝΟΙ ΕΝΤΕΡΙΚΟΙ ΥΠΟΕΠΙΘΗΛΙΑΚΟΙ ΜΥΟΪΝΟΒΛΑΣΤΕΣ ΑΠΟ ΑΣΘΕΝΕΙΣ ΜΕ ΙΔΙΟΠΑΘΗ ΦΛΕΓΜΟΝΩΔΗ ΝΟΣΟ ΤΟΥ ΕΝΤΕΡΟΥ ΠΑΡΟΥΣΙΑΖΟΥΝ ΤΑΧΥΤΕΡΗ ΙΚΑΝΟΤΗΤΑ ΕΠΟΥΛΩΣΗΣ ΠΛΗΓΗΣ» (poster)
  • Falk Foundation Symposium 215, St Petersburg, 2019, G. Kolios, K. Arvanitidis, E. Filidou, L. Kandilogiannakis, I. Drygiannakis, V. Valatas, N.Dovrolis, “Gene expression signature in Crohn's Disease: novel in silico approaches for drug repositioning and drug-disease interactions” (poster)
  • Falk Foundation Symposium 215, St Petersburg, 2019, M. Gazouli, N. Dovrolis, G. Michalopoulos, N.P. Andreou, G. Karamanolis, A. G. Eliopoulos, G. Kolios, “Microbiota Composition as a possible predictor of Infliximab Response in Inflammatory Bowel Disease” (poster)
  • 18ο Πανελλήνιο Συνέδριο Ιδιοπαθών Φλεγμονωδών Νόσων του Εντέρου, Αργολίδα, 2019, Ν. Δόβρολης, Ε. Φιλίδου, Λ. Κανδηλογιαννάκης, Κ. Αρβανιτίδης, Γ. Κολιός, «Η ΚΟΙΝΗ ΓΟΝΙΔΙΑΚΗ ΕΚΦΡΑΣΗ ΜΕΤΑΞΥ ΤΗΣ ΝΟΣΟΥ CROHN ΚΑΙ ΑΛΛΩΝ ΙΝΩΤΙΚΩΝ ΑΣΘΕΝΕΙΩΝ ΑΝΑΔΕΙΚΝΥΕΙ ΠΟΛΛΑΠΛΑΣΙΑ ΠΑΘΟΦΥΣΙΟΛΟΓΙΚΑ ΜΟΝΟΠΑΤΙΑ ΙΝΩΣΗΣ ΣΤΟΝ ΤΕΛΙΚΟ ΕΙΛΕΟ ΕΝΑΝΤΙ ΤΟΥ ΣΙΓΜΟΕΙΔΟΥΣ» (βραβείο καλύτερης ηλεκτρονικά αναρτημένης ανακοίνωσης)
  • 18ο Πανελλήνιο Συνέδριο Ιδιοπαθών Φλεγμονωδών Νόσων του Εντέρου, Αργολίδα, 2019, Μ. Γαζούλη, Ν. Δόβρολης, Γ.Σπύρου, Γ. Κολιός, «ΔΙΑΦΟΡΙΚΗ ΦΑΙΝΟΤΥΠΙΚΗ ΑΝΑΛΥΣΗ ΤΟΥ ΓΕΝΕΤΙΚΟΥ ΚΑΙ ΜΟΡΙΑΚΟΥ ΥΠΟΒΑΘΡΟΥ ΤΩΝ ΙΔΙΟΠΑΘΩΝ ΦΛΕΓΜΟΝΟΔΩΝ ΝΟΣΩΝ ΤΟΥ ΕΝΤΕΡΟΥ, ΜΙΑ ΠΡΟΣΕΓΓΙΣΗ ΣΥΣΤΗΜΙΚΗΣ ΒΙΟΠΛΗΡΟΦΟΡΙΚΗΣ» (βραβείο καλύτερης προφορικής ανακοίνωσης)
  • Falk Foundation Symposium 214, Oxford, 2019, E. Filidou, N. Dovrolis, L. Kandilogiannakis, K. Arvanitidis, G. Kolios, “Common gene expression signature between Crohn’s Disease and other fibrotic disorders reveals enhanced fibrotic pathophysiological pathways in terminal ileum vs sigmoid” (oral presentation)
  • 14th Congress of ECCO, Copenhagen, 2019, Gazouli M., Dovrolis N., Franke A., Spyrou G.M., Kolios G., P828 Analysis of GWAS Reveals Differential Top-Ranked Risk Loci and Proteins Associated with the Inflammatory Bowel Disease Phenotypes (poster)
  • 13th Congress of ECCO, Vienna, 2018, Dovrolis, N., et al. "P073 Changes in gut microbial signatures differentiate behavioural Crohn’s disease phenotypes; an in silico approach." Journal of Crohn's and Colitis 12.supplement_1 (2018): S129-S130. (poster)
  • Falk Foundation Symposium 210, Lisbon, 2018, G. Kolios, N. Dovrolis, I. Drygiannakis, E. Filidou, L. Kandilogiannakis, K. Arvanitidis, I. Tentes, V. Valatas, “Crohn’s disease clinical phenotypes have distinct gut microbial signatures: An in silico approach” (poster)
  • 17ο Πανελλήνιο Συνέδριο Ιδιοπαθών Φλεγμονωδών Νόσων του Εντέρου, Θεσσαλονίκη, 2018, Γ.Κολιός, «Μεταφραστική έρευνα στα ΙΦΝΕ: Πως η πρόοδος στην βιολογία συστημάτων οδηγεί σε νέες θεραπείες»
  • 4ο Πανελλήνιο Συνέδριο Συνεχιζόμενης Εκπαίδευσης στην Εσωτερική παθολογία, Θεσσαλονίκη, 2018, Ν. Δόβρολης, Ι. Δρυγιαννάκης, Ε. Φιλίδου, Λ. Κανδηλογιαννάκης, Κ. Αρβανιτίδης, Ι. Τέντες, Γ. Κολιός, Β. Βαλάτας, «Συσχέτιση κλινικών φαινοτύπων της νόσου Crohn και μεταβολών της εντερικής χλωρίδας: Μια βιοπληροφορική προσέγγιση» (poster)
  • Ν. Δόβρολης, Ι. Δρυγιαννάκης, Ε. Φιλίδου, Λ. Κανδηλογιαννάκης, Κ. Αρβανιτίδης, Β. Βαλάτας, Γ. Κολιός. “Mικροβiωμα και μεταβόλωμα σε ασθενείς με Νόσο Crohn τελικού ειλεού” In 16th Panhellenic Conference on IBD, , Nafplio, Greece, 9-11 June 2017
  • Ν. Δόβρολης, Ι. Δρυγιαννάκης, Ε. Φιλίδου, Λ. Κανδηλογιαννάκης, Κ. Αρβανιτίδης, Γ. Κολιός, Β. Βαλάτας. «Το μικροβίωμα και οι διαφορετικοί φαινότυποι της νόσου Crohn: μια βιοπληροφορική προσέγγιση». ” In 16th Panhellenic Conference on IBD, , Nafplio, Greece, 9-11 June 2017
  • Dovrolis Nikolas, Kolios George, Spyrou George, Maroulakou Ioanna. «Saving time and money with computational drug repositioning: A paradigm in neurodegenerative diseases.» . 2nd Conference of Pharmacoepidimiology, Alexandroupolis, Greece. 19-21 May 2017
  • E. Kaldoudi, N. Dovrolis, "Semantic Social Networks for Integrated Healthcare", in L.M. Camarinha-Matos, R.J. Scherer (Eds.) Collaborative Systems for Reindustrialization. 14th IFIP WG 5.5 Working Conference on Virtual Enterprises PRO-VE 2013, Dresden. Springer, Heidelberg, 2013 (pp. 729-736)
  • Kaldoudi, E., and N. Dovrolis. "Comorbidities Modeling for Supporting Integrated Care in Chronic Cardiorenal Disease." XIII Mediterranean Conference on Medical and Biological Engineering and Computing 2013. Springer International Publishing, 2014.
  • Hendrix, M., Protopsaltis, A., Dunwell, I., de Freitas, S., Petridis, P., Arnab, S., Dovrolis, N., Kaldoudi, E., Taibi, D., Dietze, S., Mitsopoulou, E., Spachos, D., Bamidis, P., Technical Evaluation of The mEducator 3.0 Linked Data-based Environment for Sharing Medical Educational Resources, World Wide Web Conference 2012, 2nd International Workshop on Learning and Education with the Web of Data, Lyon, France; 04/2012
  • Dietze, S., Yu, H. Q., Giordano, D., Kaldoudi, E., Dovrolis, N., Taibi, D., Linked Education: interlinking educational Resources and the Web of Data, in Proceedings of the 27th ACM Symposium On Applied Computing (SAC-2012), Special Track on Semantic Web and Applications, Riva del Garda (Trento), Italy, 2012.
  • Stefanut, T., Gorgan, D., Dovrolis, N., Kaldoudi, E., Dietze, S., Creating Medical eLearning Resources through Repurposing Procedures, Social and Semantic Web Functionalities, 1st International Conference on Medical Education Research, Thessaloniki, Greece, 2012.
  • Stefanut, T., Gorgan, D., Dovrolis, N., Kaldoudi, E., Dietze, S., Creating Medical-related Learning Resources using Repurposing Procedures and Semantic Web Functionalities, in Proceedings of IADIS eSociety, Berlin, Germany, 2012.
  • Dietze, S., Kaldoudi, E., Dovrolis, N., Yu, H.Q., Taibi, D. (2011) MetaMorphosis+ – A social network of educational Web resources based on semantic integration of services and data, 10th International Semantic Web Conference (ISWC2011), Bonn, Germany
  • Kaldoudi, E., Dovrolis, N., Dietze, S., Information Organization on the Internet based on Heterogeneous Social Networks, 29th ACM International Conference on Design of Communication (ACM SIGDOC’11), Pisa, 2011.
  • Dovrolis, N., Stefanut, T., Dietze, S., Yu, H.Q., Valentine, C. and Kaldoudi, E., Semantic Annotation and Linking of Medical Educational Resources, 5th European Conference of the International Federation for Medical and Biological Engineering (IFMBE MBEC), Budapest, 2011.
  • Yu, H. Q., Dietze, S., Li, N., Pedrinaci, C., Taibi, D., Dovrolis, N., Stefanut, T., Kaldoudi, E., Domingue, J., A Linked Data-driven & Service-oriented Architecture for Sharing Educational Resources, in Proceedings of Linked Learning 2011: the 1st International Workshop on eLearning Approaches for the Linked Data Age, CEUR-Vol 717, 2011.
  • Kaldoudi, E., Dovrolis, N., Giordano, D., Dietze, S., Educational Resources as Social Objects in Semantic Social Networks, in Proceedings of Linked Learning 2011: the 1st International Workshop on eLearning Approaches for the Linked Data Age, CEUR-Vol 717, 2011.
  • S. Konstantinidis, N. Dovrolis, E. Kaldoudi, and P.D. Bamidis, “Geotagged Repurposed Educational Content through mEducator Social Network Enhances Biomedical Engineering Education”, P.D. Bamidis and N. Pallikarakis (Eds.): MEDICON 2010, IFMBE Proceedings vol. 29, pp. 967–970, 2010
  • N. Dovrolis, S. Konstantinidis, P. Bamidis, E. Kaldoudi, “Depicting Educational Content Re-purposing Context and Inheritance”, ITAB2009: 9th International Conference on Information Technology and Applications in Biomedicine, Larnaca, Cyprus, November 5-7, 2009
  • N. Dovrolis, K. Zigeridou, and E. Kaldoudi, “A Semantically Linked Virtual Community for Sharing Educational Resources in Biological Sciences”, p. 33 in the Proceedings of HSCBB_10: The 5th Conference of the Hellenic Society for Computational Biology and Bioinformatics, Alexandroupolis, Greece, 17-19 October 2010
  • E. Kaldoudi, and N. Dovrolis, “Sharing and Linking Medical Educational Resources on the Semantic Web – The MetaMorphosis Network Experience”, 6th International Conference of Aerospace Medicine, Thessaloniki, Greece, 22-26 September 2010
  • E. Kaldoudi, N. Dovrolis, S. Konstantinidis, P. Bamidis, “Social Networking for Learning Object Repurposing in Medical Education”, ICICTH2009: 7th International Conference on Information & Communication Technologies in Health, Samos, July 16-18, 2009, pp. 128-136
  • N. Dobrolis, E. Kokkoris, F.Printezi, N. Schalekis and G.Spyrou FMBR- Academy of Athens, A cell-like approach to grid computing, Proceedings of the 7th Hellenic European Conference on Computer Mathematics and its applications HERCMA 2005

Deliverables in Competitive R&D EU Projects:

  • A. Antoniades, A. Salva, S. Dietze, N. Dovrolis, S. Konstantinidis, A. Salva, E. Mitsopoulou, C. Schizas, C. Pattichis, “mEducator D8.2 Exit and sustainability model for mEducator”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006),April 2012
  • E. Mitsopoulou, J. Myllari, D. Giordano, H.Q. Yu, N. Dovrolis, P. Staccini, A. Tosheva, L. Toleva, M. Hendrix, S. Dietze, A. Salva, C. Bratsas, P. Bamidis, “mEducator D.6.2 Recommendations towards a standards-based Reference Model for sharing educational content in healthcare” supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), February 2012
  • A. Antoniades, A. Salva, S. Dietze, N. Dovrolis, S. Konstantinidis, E. Mitsopoulou, C. Danakis, C. Schizas, C. Pattichis, “mEducator D8.1 Sustainability of content and of individual content sharing solutions.”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), January 2012
  • T.Stefanut, D. Gorgan, A. Salva, F. Castilla, N. Dovrolis, E. Kaldoudi, S. Konstantinidis, D. Spachos, C. Lakka, S. Dietze, H.Q. Yu, E. Mitsopoulou, L. Auneau, J. Myllari, K. Zygeridou, M. Nikolaidou, P. Bamidis, “mEducator D.7.1 – Core documentation, e.g. teacher/student guides, re-purposing guide, technical manuals”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), January 2012
  • M. Hendrix, S. Dietze, H.Q.Yu, E. Kaldoudi, S. Konstantinidis, D. Spachos, C. Lakka, M. Nikolaidou, N. Dovrolis, J. Mylläri, D. Giordano, T. Ştefănuţ, C. Bratsas, A. Protopsaltis, K. Zigeridou, E. Dafli, P. Bamidis, “Report on Solution 2. Pilot Content Discovery and sharing, Evaluation of mEducator Metadata Adequacy and Content Sharing: Strengths, Weaknesses and Problems, Recommendations and Best Practices”, Deliverable 5.3. in the project “mEducator: Multi-type Content Repurposing and Sharing in Medical Education”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), September 2011
  • C. Lakka, E. Dafli, P. Bamidis, N. Dovrolis, E. Kaldoudi, A. Salva, F. Grau, E. Mitsopoulou, D. Giordano, P. Staccini, A. Mistretta, “Report on Solution 1. Pilot Content Discovery and sharing, Evaluation of mEducator Metadata Adequacy and Content Sharing: Strengths, Weaknesses and Problems, Recommendations and Best Practices”, Deliverable 4.3. in the project “mEducator: Multi-type Content Repurposing and Sharing in Medical Education”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), September 2011
  • S. Dietze, H.Q. Yu, D. Taibi, N. Dovrolis, T. Stefanut, E. Kaldoudi, “Development and Deployment of Content Sharing Solution 2: Federated LCMS via Semantic Web (Services) Technologies”, Deliverable 5.2. in the project “mEducator: Multi-type Content Repurposing and Sharing in Medical Education”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), February 2011
  • E. Kaldoudi, S. Konstantinidis, N. Dovrolis, K. Zigeridou, M. Nikolaidou, P. Bamidis, “mEducator Implementation Documentation and Best Practices (intermediate version) ”, Deliverable 2.3a in the project “mEducator: Multi-type Content Repurposing and Sharing in Medical Education”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), April 2010
  • All Members of the mEducator Technical Reference Group, “mEducator D2.1 Analysis and Description of Healthcare LOM”, supported by the eContentplus 2008 program, Information Society and Media Directorate-General, European Commission, Grant No.: ECP 2008 EDU 418006), December 2009

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Dr. Kolios George
Professor of Pharmacology
Head of the Department

Dept. of Medicine, DUTH
68100 Alexandroupolis
Tel No: 25510 30368
fax: 25510 30368
e-mail: gkolios@med.duth.gr
Dr. Vargemezis Vassilios
Professor of Nephrology
Head of the Department

University General Hospital of Alexandroupolis
68100 Alexandroupolis
Tel No: 255135 3147, 2551030345
fax: 255135 3146
e-mail: vargem@med.duth.gr
Dr. Eleni Kaldoudi
Associate Professor, Physics of Medical Imaging – Telemedicine

Dept. of Medicine, DUTH
Dragana, Alexandroupolis Greece GR68100
tel. +30 2551030329
skype: kaldoudi2
email: kaldoudi@med.duth.gr
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Staff Research Scientist - Professor Level

Biomedical Research Foundation Academy of Athens
Center: Environmental Health & Biophysics
Telephone : +30 210 6597 151
Fax : +30 210 6597 545
e-mail : gspyrou@bioacademy.gr
Stavros Venetis

Alpha Πληροφορική Α.Ε
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tel: +30 2551038444
email: stavros@alphait.gr

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